Atomic transforms collections of personal Markdown notes into an AI-augmented knowledge graph by breaking documents down into semantically linked conceptual units. Users capture thoughts, research excerpts, and web clippings as modular notes that the system automatically chunks, embeds, and categorizes with hierarchical tags. An interactive force-directed canvas maps out the entire knowledge base, positioning related ideas closer together based on embedding cosine similarity rather than manual folder hierarchies. Built-in vector search queries across text embeddings directly within SQLite, retrieving precise contextual snippets in response to natural language prompts. The automated wiki engine synthesizes disparate notes into comprehensive reference articles equipped with verifiable inline citations back to original source materials. Integrated conversational agents leverage retrieved knowledge context to answer research questions, surface contradictions across past entries, and draft structured daily briefings. External AI tools can read, search, and update stored knowledge through an embedded Model Context Protocol server endpoint. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. MIT licensed.

Sage Wiki turns a pile of unstructured documents into a fully interlinked, searchable wiki by running them through a five-pass LLM compiler pipeline. Inspired by Andrej Karpathy's vision of LLM-compiled knowledge bases, the pipeline processes source files through diff detection, summarization, concept extraction, image captioning, and cross-reference discovery, with parallel LLM calls and checkpoint/resume for vaults scaling to 100,000+ documents. The typed ontology graph stores entities and relations with BFS traversal, configurable relation types, multilingual synonyms, and a promotion/demotion lifecycle backed by grounding verification and consensus scoring. Multi-format ingestion handles Markdown, PDF, Word, Excel, PowerPoint, EPUB, email, CSV, images, and code files without manual tagging. LLM provider support spans Anthropic, OpenAI, Gemini, Ollama, and any OpenAI-compatible API, with per-pass model routing enabling cost optimization by assigning cheaper models to simpler tasks. The built-in MCP server exposes 17 tools over SSE transport for integration with Claude, Cursor, and any MCP-compatible agent, while native Obsidian vault overlay ensures existing note workflows remain undisrupted. Team deployment supports Git-synced shared wikis, centralized server access, and hub federation across multiple projects. Ships as a single Go binary with Docker Compose multi-arch images serving the web UI on port 3333. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. MIT licensed.