TriliumNext organizes notes in an infinitely deep tree where any single note can be cloned into multiple branches without duplication, building personal knowledge bases that mirror how ideas actually connect rather than forcing a single rigid folder hierarchy. Carrying forward the original Trilium project under active community stewardship with nearly 37,000 GitHub stars, the application is built on TypeScript with a CKEditor 5 WYSIWYG editor supporting rich text, tables, images, KaTeX math expressions, Mermaid diagrams, Excalidraw canvases, mind maps, spreadsheets with XLSX and CSV import/export, and code blocks with full syntax highlighting. A built-in JavaScript scripting engine runs on both frontend and backend, enabling custom widgets, automated workflows, scheduled tasks, and direct interaction with external REST services through a typed Script API. Full-text and fuzzy search with attribute-based queries locates any note instantly across databases tested at over 100,000 notes without performance degradation. The v0.104 release introduced importers for OneNote, Notion, Google Keep, Anytype, and Obsidian alongside 16 dedicated security fixes. Per-note AES encryption, OpenID Connect authentication, and TOTP two-factor protection safeguard sensitive content. The sync server keeps desktop clients, the progressive web app, and mobile devices in lockstep with zero third-party cloud dependency. Web Clipper captures content directly from browsers. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. AGPL-3.0 licensed.

Backed by over 45,000 GitHub stars and described as the tool that replaces Notion, Evernote, and Anki in a single Docker container, SiYuan is the privacy-first knowledge management system where every paragraph, heading, and list item is a uniquely addressable content block. The block-level architecture enables bidirectional links, transclusion embeds, and SQL query blocks that dynamically aggregate content across your entire workspace, while the knowledge graph visualization maps relationship networks between documents and blocks. Built-in databases support table views with relation and rollup columns, filter composition, sorting, and template-based calculations for structured data management alongside freeform notes. The FSRS spaced repetition engine turns any content block into a flashcard with scientifically calibrated review scheduling, eliminating the need for separate memorization tools. AI integration connects to OpenAI-compatible APIs for writing assistance, translation, summarization, and Q&A chat, with semantic search using embeddings and reranking for intelligent content retrieval. The Bazaar community marketplace delivers plugins, themes, templates, and widgets through a managed extension system with TypeScript plugin APIs. End-to-end encrypted synchronization works across S3-compatible storage, WebDAV servers, or SiYuan's own cloud service, while Tesseract OCR extracts searchable text from images and the web clipper captures pages from Chrome, Edge, and Firefox. Export targets include Markdown with assets, PDF, Word, and HTML. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. AGPL-3.0 licensed.

For people whose notes number in the tens of thousands, Trilium Notes is the hierarchical note-taking application built specifically for large personal knowledge bases - actively maintained as TriliumNext. Notes arrange into arbitrarily deep trees where every note is both content and container, and cloning lets a single note live in multiple places at once - bash notes belong under both Linux and Scripting, and Trilium refuses to make you choose. A WYSIWYG editor handles rich text, tables, math, and syntax-highlighted code blocks with Markdown-style shortcuts, while dedicated note types cover Excalidraw sketches, mind maps, geo maps with GPX tracks, relation maps that visualize connections between notes, and tables with typed columns. The attribute system is the power layer: labels attach queryable metadata (#year=1999, #author), relations create named links between notes, and both inherit down the tree - feeding full-text search, saved queries, and scripting. Scripting is Trilium's deepest differentiator: JavaScript code notes run on events like note changes or hourly schedules, build custom widgets, and add server-side logic, turning the knowledge base into a programmable platform. Protected notes encrypt sensitive content, note hoisting focuses on subtrees, and the self-hosted server syncs desktop clients across devices.