OpenKnowledge turns a folder of markdown files into a workspace where you and an AI agent can write in the same document. The editor feels like a Notion page but saves plain markdown, with a visual mode, a markdown mode, a properties panel for titles and tags, and a file navigator with search and tabs. Ask Claude, Codex, or another harness to draft a recap, and the edit appears beside the chat as you watch. Select any passage and leave a comment, then send all open comments to the agent in one message. A timeline panel lists every change with a before and after diff, so an agent's rewrite is easy to review and undo. Skills Studio covers writing, browsing, and installing agent skills, and it can link one skills folder across Claude, Cursor, Codex, and others. Starter packs set up LLM wikis and second brains, and a graph view shows how wiki links connect pages. Git sync shares a knowledge base with teammates, and rich components like callouts, tabs, and diagrams make specs readable. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. GPL-3.0 licensed.

Atomic transforms collections of personal Markdown notes into an AI-augmented knowledge graph by breaking documents down into semantically linked conceptual units. Users capture thoughts, research excerpts, and web clippings as modular notes that the system automatically chunks, embeds, and categorizes with hierarchical tags. An interactive force-directed canvas maps out the entire knowledge base, positioning related ideas closer together based on embedding cosine similarity rather than manual folder hierarchies. Built-in vector search queries across text embeddings directly within SQLite, retrieving precise contextual snippets in response to natural language prompts. The automated wiki engine synthesizes disparate notes into comprehensive reference articles equipped with verifiable inline citations back to original source materials. Integrated conversational agents leverage retrieved knowledge context to answer research questions, surface contradictions across past entries, and draft structured daily briefings. External AI tools can read, search, and update stored knowledge through an embedded Model Context Protocol server endpoint. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. MIT licensed.

A self-hosted "second brain": Khoj indexes your own files and answers questions from them, parsing Markdown (whole Obsidian vaults included), org-mode, PDF, Word, plain text, Notion pages, GitHub repositories, and images described by a vision model, then embedding everything with sentence-transformers into a vector index for semantic search and RAG with cited sources. Any LLM backend works: local models like Llama, Qwen, or Mistral via Ollama, or cloud models like GPT, Claude, and Gemini. You can build custom agents, each with its own persona, scoped knowledge base, chat model, and tools such as web search and code execution. Scheduled automations run recurring research and deliver newsletters or notifications to your inbox, and research mode performs multi-hop web searches with inline citations. Access it from a browser, the Obsidian plugin, Emacs, desktop, or WhatsApp - all clients connect to the same self-hosted instance, making Khoj one of the few AI assistants Emacs users can point at decades of org files. Semantic search means recall works without exact keywords: "that paper about forecasting with transformers" surfaces the right PDF even when you cannot remember its title. Switching LLM backends never requires re-indexing your documents, and with a local model via Ollama, even inference stays on hardware you control - journals, research, and private notes are never sent anywhere. Python/FastAPI stack, AGPL-licensed, with PostgreSQL storage.

ThoughtDAG turns a long AI conversation from a scroll you cannot rearrange into a map you can edit, branch, and reconnect. Every question and answer becomes a node on an infinite canvas, and the wires between nodes are not decoration: they decide exactly what context the model sees next. Follow a promising thread, park a side question on its own branch, or cut a wire when an early assumption starts poisoning later answers, all without deleting the work that led there. Zoom out to read the shape of an investigation, then zoom back in to full answers, attachments, and highlighted passages. Drop in documents and files as material nodes, ask questions from them, and preview precisely what will be sent before a model runs. Past coding agent sessions can be opened as read-only graph mirrors, so a discussion that started in a terminal can be inspected, cited, and continued on the canvas. Memory lives in readable dossiers that collect decisions and open questions per topic, with sources attached, and relevant dossiers join new questions when you ask. Export a backup, a Markdown context chain, or a thought map that shares the structure of your thinking without dumping the whole transcript. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. MIT licensed.

The most feature-complete open-source alternative to Google's NotebookLM — a self-hosted research platform where you upload PDFs, videos, audio files, and web pages into organized notebooks, then chat with your content, generate multi-speaker podcasts, and run semantic search across everything without sending a single byte to Google's servers. The podcast engine supports 1-4 fully customizable speakers with backstories, personalities, and expertise profiles, generating professional audio dialogue through OpenAI, ElevenLabs, Google TTS, or completely local text-to-speech via Kokoro for maximum privacy. Content processing uses token-based chunking with RAG-powered retrieval grounded in your uploaded sources, while both full-text keyword search and semantic vector search via SurrealDB enable conceptual discovery across all notebooks. The 18+ supported AI providers include OpenAI, Anthropic, Google Gemini, Groq, Ollama, LM Studio, and more — configurable per task so you can route cheap models to summarization and powerful models to analysis. Content transformations extract insights, generate summaries, create study guides, and produce structured outputs from any source material. The MCP integration connects Open Notebook to Claude Desktop, VS Code, and other MCP clients for seamless workflow integration. A full REST API on port 5055 enables complete automation of notebook management, source upload, and podcast generation. Deploy via Docker Compose with the application container, SurrealDB v2 on RocksDB, and optional TTS containers. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. MIT licensed.

Instead of burying your documents in a vector index you cannot inspect, LLM Wiki v2 files them into a Markdown wiki you can read, browse, and question. Drop text, Markdown, or PDF files anywhere on the page and each one is catalogued automatically, filed into a folder that says what it holds, and linked to the notes it relates to. Ask a question and the answer cites the exact notes it used, with clickable sources you can open, verify, and correct. New documents update the note on their subject instead of piling up as disconnected chunks, so what you teach it stays taught. A small classifier routes filing and questions through the folder tree, keeping the wiki quick and cheap as it grows, and you can browse the tree, follow see-also links, move or delete notes, and watch the tokens spent by both the model and the classifier. Connect OpenRouter, OpenAI, Gemini, a local Ollama, or any compatible endpoint, and expose the same wiki to Claude Code or Codex as long-term memory they can recall from and write to. Because every note is plain Markdown in a folder you own, the whole knowledge base can live in git beside your other files. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. AGPL-3.0 licensed.

Hatchdoor gives your Markdown notes two front doors at once: a fast web interface for you, and an MCP endpoint where AI agents read and edit the very same vault. Point it at any folder of Markdown files, an existing Obsidian vault included, and it indexes everything into a disposable SQLite read model that rebuilds itself from your files if deleted. In the browser you browse folders, follow wikilinks that survive renames, explore backlinks and graph views, and search by keyword or meaning across every vault you mount. The live editor shows Markdown syntax only on the line you are editing and saves automatically, while concurrency checks refuse a save when the note changed underneath you. Agents connect with their own token and start read-only; turn writes on and Claude Code, Codex, Cursor, or Hermes can create, edit, move, and link notes through the same checked operations the interface uses. Saved queries in Obsidian's Bases syntax render as live tables, attachments preview inline, and optional git integration commits and pushes every change back to your vault's repository. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. AGPL-3.0 licensed.

PenX delivers an open-source structured note-taking application that functions as a personal database disguised as an elegant editor — combining the outline workflow of Workflowy and Roam Research with the structured data capabilities of Tana through MetaTags that transform every note into a queryable database record. The local-first architecture stores all data on-device using PGLite, an in-process PostgreSQL-compatible engine, ensuring data ownership regardless of cloud connectivity. End-to-end encryption protects all synchronized data so that even the sync server cannot read your notes, tasks, ideas, or documents. GitHub-based version control provides out-of-the-box backup and history with full commit-level recovery. MetaTags are the core innovation — attaching structured tags to any note converts it into a database entry with typed fields, enabling table views, filters, and queries across your knowledge base without imposing rigid folder hierarchies. The daily notes workflow encourages free-form capture while MetaTags handle organization automatically, letting you record thoughts without deciding physical location upfront. AI-driven features assist with content generation, summarization, and intelligent search across your personal data hub. Real-time sync keeps web, desktop, and mobile in perfect alignment. Cross-platform availability includes web, desktop for Windows, macOS, and Linux, iOS, and Chrome extension. Deploy the web service via Next.js with pnpm using tRPC and Prisma. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. AGPL-3.0 licensed.

In seven wizard steps, PandaWiki sets up a product docs, manual, FAQ, or blog site whose built-in AI answers visitors using only your own content. Those visitors can chat with an assistant that cites its sources and accepts image questions, or switch to a docs-only search that lists ranked pages with summaries. Publishing stays under control: each document has three switches, visible in navigation, reachable by URL, and answerable by AI, and nothing appears or gets learned until it is published. Authors write in a Markdown and HTML editor, or import from URLs, RSS and Atom feeds, sitemaps, offline .txt, .md, .xlsx, .docx, and .pdf files, Notion, Yuque, SiYuan, Wiki.js, Feishu, Confluence, and DingTalk. Pages export to Word, PDF, or Markdown. The wizard covers models, domain, HTTP or HTTPS ports, import, publishing, answer testing, and page decoration. One knowledge base can also feed a web widget and DingTalk, Feishu, WeCom, and Discord bots. Administrators get a dashboard of visits, questions, visitor regions, hot documents, and referring domains. Chat models come from Baizhi Cloud, DeepSeek, OpenAI, or Ollama, while vector and reranking models are built in. The open-source edition covers one wiki site, 300 documents, and one admin, and its console and documentation are in Chinese. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. AGPL-3.0 licensed.

For people whose notes number in the tens of thousands, Trilium Notes is the hierarchical note-taking application built specifically for large personal knowledge bases - actively maintained as TriliumNext. Notes arrange into arbitrarily deep trees where every note is both content and container, and cloning lets a single note live in multiple places at once - bash notes belong under both Linux and Scripting, and Trilium refuses to make you choose. A WYSIWYG editor handles rich text, tables, math, and syntax-highlighted code blocks with Markdown-style shortcuts, while dedicated note types cover Excalidraw sketches, mind maps, geo maps with GPX tracks, relation maps that visualize connections between notes, and tables with typed columns. The attribute system is the power layer: labels attach queryable metadata (#year=1999, #author), relations create named links between notes, and both inherit down the tree - feeding full-text search, saved queries, and scripting. Scripting is Trilium's deepest differentiator: JavaScript code notes run on events like note changes or hourly schedules, build custom widgets, and add server-side logic, turning the knowledge base into a programmable platform. Protected notes encrypt sensitive content, note hoisting focuses on subtrees, and the self-hosted server syncs desktop clients across devices.

Backed by over 45,000 GitHub stars and described as the tool that replaces Notion, Evernote, and Anki in a single Docker container, SiYuan is the privacy-first knowledge management system where every paragraph, heading, and list item is a uniquely addressable content block. The block-level architecture enables bidirectional links, transclusion embeds, and SQL query blocks that dynamically aggregate content across your entire workspace, while the knowledge graph visualization maps relationship networks between documents and blocks. Built-in databases support table views with relation and rollup columns, filter composition, sorting, and template-based calculations for structured data management alongside freeform notes. The FSRS spaced repetition engine turns any content block into a flashcard with scientifically calibrated review scheduling, eliminating the need for separate memorization tools. AI integration connects to OpenAI-compatible APIs for writing assistance, translation, summarization, and Q&A chat, with semantic search using embeddings and reranking for intelligent content retrieval. The Bazaar community marketplace delivers plugins, themes, templates, and widgets through a managed extension system with TypeScript plugin APIs. End-to-end encrypted synchronization works across S3-compatible storage, WebDAV servers, or SiYuan's own cloud service, while Tesseract OCR extracts searchable text from images and the web clipper captures pages from Chrome, Edge, and Firefox. Export targets include Markdown with assets, PDF, Word, and HTML. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. AGPL-3.0 licensed.

Every line an indentable bullet, every bullet a first-class block that can be referenced, embedded, and queried anywhere: Logseq is a privacy-first, local-first knowledge platform built around the block outliner. The daily journal is the system's beating heart - each day opens a fresh date-stamped page where tasks, meeting notes, and fleeting ideas land as blocks without filing decisions, then connect later through [[wikilinks]] with automatic bidirectional backlinks and ((block references)) that transclude any bullet into any page. Everything persists as plain Markdown or Org-mode files on disk - git-friendly, greppable, and owned forever, with sync via iCloud, Dropbox, Syncthing, Git, or an optional end-to-end encrypted service. Built-in tooling goes beyond notes: TODO/DOING task states with scheduling, native PDF annotation with area highlights, spaced-repetition flashcards, whiteboards for visual thinking, Zotero integration for researchers, and Datalog-powered queries that build dynamic views across the entire graph. A marketplace of hundreds of community plugins and themes adds AI chat, Ollama local-model integration, and custom workflows. Written in Clojure/ClojureScript, AGPL-3.0 licensed with 320+ contributors, and completely free - the local-first Roam for people who refuse subscriptions and lock-in.

Chat with your own documents: AnythingLLM, from Mintplex Labs, wraps retrieval-augmented generation (RAG) in an open-source application anyone can run. You organize content into workspaces, each an isolated namespace with its own documents, vector embeddings, chat history, and settings, so one instance can hold several separate knowledge bases. Upload PDFs, DOCX, TXT, and other formats, or scrape web pages; the built-in collector parses and chunks them into a vector database (LanceDB by default, with Pinecone, Chroma, Qdrant, and others supported). Answers cite their source documents. It works with both cloud LLMs (OpenAI, Anthropic, Gemini) and local ones via Ollama or LM Studio, and the embedding model is separately configurable. Beyond RAG chat, it includes AI agents that can browse the web and run tools, an embeddable chat widget for your website, a developer API, and multi-user mode with admin, manager, and default roles plus per-workspace access control. Context assembly is smarter than naive RAG: pinned documents, attached files, vector search hits, and recent chat history are combined under a token budget so the model's context window is filled efficiently, and each workspace supports multiple independent conversation threads against the same knowledge base. Because the embedding model, vector store, and chat LLM are all independently swappable, you can move between providers without re-ingesting a single document. The stack is Node.js with a React frontend, MIT-licensed.

A folder of documents stops being a pile of files once EdgeQuake extracts a knowledge graph you can explore and question. Upload text, PDFs, or markdown and the pipeline extracts people, organizations, places, and the relationships between them, then shows progress and entity counts for every file. The graph viewer draws the network with color-coded entity types, a searchable entity list, and a details panel that lists descriptions, properties, and linked entities. Ask a question in the query chat and pick a retrieval mode, from keyword lookups to hybrid and global themes, and each answer arrives with numbered sources and a button that highlights the matching nodes on the graph. Workspaces keep projects separate, and each can assign a different model to extraction, answering, keywords, summaries, and embeddings. A cost dashboard breaks token use and spend down by stage with a monthly budget bar. A members page, an API explorer, and Swagger docs round out administration. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. Apache-2.0 licensed.

Sage Wiki turns a pile of unstructured documents into a fully interlinked, searchable wiki by running them through a five-pass LLM compiler pipeline. Inspired by Andrej Karpathy's vision of LLM-compiled knowledge bases, the pipeline processes source files through diff detection, summarization, concept extraction, image captioning, and cross-reference discovery, with parallel LLM calls and checkpoint/resume for vaults scaling to 100,000+ documents. The typed ontology graph stores entities and relations with BFS traversal, configurable relation types, multilingual synonyms, and a promotion/demotion lifecycle backed by grounding verification and consensus scoring. Multi-format ingestion handles Markdown, PDF, Word, Excel, PowerPoint, EPUB, email, CSV, images, and code files without manual tagging. LLM provider support spans Anthropic, OpenAI, Gemini, Ollama, and any OpenAI-compatible API, with per-pass model routing enabling cost optimization by assigning cheaper models to simpler tasks. The built-in MCP server exposes 17 tools over SSE transport for integration with Claude, Cursor, and any MCP-compatible agent, while native Obsidian vault overlay ensures existing note workflows remain undisrupted. Team deployment supports Git-synced shared wikis, centralized server access, and hub federation across multiple projects. Ships as a single Go binary with Docker Compose multi-arch images serving the web UI on port 3333. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. MIT licensed.

Positioned as the open-source NotebookLM alternative for AI agents, SurfSense delivers a live web research platform where your agents access structured data from Reddit, YouTube, Instagram, TikTok, Amazon, Walmart, Google Maps, Google Search, Indeed, and any page on the open web through one REST API or MCP server. Scheduled and event-triggered agents transform findings into briefs, alerts, podcasts, and presentations, while a built-in knowledge base keeps every discovery searchable with Perplexity-style cited answers using hybrid semantic and full-text search powered by PostgreSQL with pgvector. Upload PDFs, Office documents, images, and audio files, or sync Google Drive, OneDrive, and Dropbox — 50+ file formats supported with AI file sorting that auto-organizes documents by source, date, and topic. The MCP server exposes scrapers, knowledge base, and workspaces as native tools for Claude, Cursor, and any MCP-compatible agent. Cross-country proxy rotation handles Reddit, TikTok, and Google Search scraping with geo-aware sticky sessions and captcha-aware anti-bot handling. The platform features collaborative chats, multi-format document export, git-native knowledge base with Open Knowledge Format export, and a desktop quick-ask panel with global shortcut. Docker Compose deployment manages nine services including Caddy proxy, PostgreSQL, Redis, FastAPI backend, Celery workers, zero-cache real-time sync, and Next.js frontend with automatic Watchtower updates. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. AGPL-3.0 licensed.