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Depictio

For teams drowning in pipeline output nobody reads, Depictio turns workflow results into dashboards you can hand to a collaborator. A MultiQC tab answers the first questions about a sequencing run: how many reads survived trimming, how evenly they spread across samples, and whether base quality holds to the end of the read, all in one glanceable table. Filter by sample, habitat, site, or sampling date on the left and every panel on the page follows, from community composition cards counting distinct taxa and phyla to differential abundance views that show what was tested, what survives correction, and how large the effects are. Alpha diversity tabs summarise richness and evenness per sample with rarefaction curves, and a sampling sites map lets you click or lasso points to filter the whole dashboard by geography. Forty two ready-made templates cover nf-core pipelines such as ampliseq, atacseq, and airrflow, while outputs from Nextflow, Snakemake, Galaxy, or plain shell scripts feed the same builder. Even a classic tabular dataset becomes an overview of distributions, box plots, and threshold counts, so the same tool serves a wet lab and a data science team. Running on a dedicated VPS on RepoCloud with guaranteed CPU, RAM, and SSD, full root SSH access, and a browser serial console. MIT licensed.

Depictio
Depictio
Depictio
Depictio
Depictio

Benefits

  • Pipeline Output Becomes Readable
  • Instead of folders of reports nobody opens, Depictio renders workflow results as dashboards with charts, tables, maps, and cards that collaborators can explore without rerunning anything.
  • Filters Move Every Panel
  • Sample, habitat, site, and date filters apply to every tab at once, and clicking or lassoing points on the sampling map narrows the whole dashboard by geography instantly.
  • 42 Pipeline Templates Ready
  • Ready-made templates cover nf-core pipelines including ampliseq, atacseq, and airrflow, while Nextflow, Snakemake, Galaxy, and shell outputs feed the same dashboard builder.
  • Build With Or Without Code
  • Assemble dashboards visually or define them in configuration, then share a link your collaborators open in a browser, with no local installation or pipeline rerun required.

Features

  • MultiQC Run Overview
  • Aggregates per-sample FastQC and Cutadapt results into run quality tables with trimmed bases, read lengths, duplication, and GC percentages per sample.
  • Diversity Dashboards
  • Alpha diversity, community composition, and differential abundance tabs show taxa counts, phyla breakdowns, FDR calls, and effect sizes per contrast.
  • Linked Sample Filtering
  • Left-hand filters for sample scope, habitat, site, and sampling period drive every chart, table, and map on the dashboard simultaneously.
  • Sampling Sites Map
  • Geographic map of sampling sites coloured by habitat, with click and lasso selection that filters all panels to the chosen locations.
  • Workflow Engine Support
  • Ingests outputs from Nextflow, Snakemake, Galaxy, and shell pipelines, with storage on SeaweedFS S3 and data handled through Polars and FastAPI.
  • General Dataset Overviews
  • Plain tabular data such as the classic Iris dataset becomes distribution cards, box plots, histograms, and threshold counts without bioinformatics tooling.

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